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Show the publications which have an author whose name contains the given string. Default: Close.
Find genes that express above a given value in the given sample. Default: above 1000 TPM in RT (root tip). Note: if you'd like to study differential expression, make one list of genes with expression above a certain amount in a sample and another with expression below a certain amount in a different sample. Intersect the two lists and you have genes that satisfy both criteria.
Find genes that have high expression in a given tissue in at least one of the expression experiments. (Default: expression>100 in Nodules.)
Display the expression in various tissues from various studies for the given gene. Default: Phvul.002G040500.
Given a gene, provide its GO ontology annotations. Default: Phavu.002G040500.
Given a gene, show its homologues (based in this mine on common gene family membership). Default: Phavu.002G040500.
Given genes, find their homologous genes in a given species. Default: homologues of Glyma.01G000100 in Cicer arietinum.
Given genes, find their homologous genes in a given species
Given a gene, provide its ontology annotations. Default gene: Glyma.12G011700.
Display the proteins and their (truncated) sequences associated with a given gene. Default: CDCFrontier.Ca_00007.
Display the transcripts and their (truncated) sequences for a given gene. Default: Phvul.002G040500.
List genes whose description contains the given string. Default: HD-ZIP.
Show proteins for genes whose description contains the given string. Default: HD-Zip.
Show the transcripts for genes whose description contains the given string. Default: HD-Zip.
Find the genes that are annotated by the given GO term. (Default: photosynthesis.)
Find genes associated with a term in the description of GO terms, along with their upstream flanking regions. Default: "nodule".
Find proteins that are translated by genes associated with the given GO term. Default: photosynthesis.
Find publications containing the given keyword in the title. Default: expression.
Find GWAS that show segregation for the desired phenotype. Default: Seed weight.
Find the QTLs which are associated with the given phenotype. Default: Plant height.
Find the proteins which have protein HMM matches that belong to the requested protein domain, e.g. PF01582.
Find proteins and genes for which the protein domain has the given Interpro short name.
Given a gene or genes, get their proteins
Find genes within a given region. Default: Pv01:1000000-2000000.
Find genetic markers that are located within the given genomic region. Default: Pv01:1000000-2000000.
Show the synteny blocks (containing pairs of syntenic regions) within the given region. Default: Aradu.A01:1000000-3000000.
Find publications containing the given string in the title. Default: climbing.
Search for QTLs associated with the given Trait Ontology term. (Default: seed weight.)
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